Computational aspects of systematic biology

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Computational aspects of systematic biology

We review the resources available to systematic biologists who wish to use computers to build classifications. Algorithm development is in an early stage, and only a few examples of integrated applications for systematic biology are available. The availability of data is crucial if systematic biology is to enter the computer age.

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A pair in a string is the occurrence of the same substring twice. A pair is maximal if the two occurrences of the substring cannot be extended to the left and right without making them different. The gap of a pair is the number of characters between the two occurrences of the substring. In this paper we present methods for finding all maximal pairs under various constraints on the gap. In a str...

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ژورنال

عنوان ژورنال: Briefings in Bioinformatics

سال: 2006

ISSN: 1467-5463,1477-4054

DOI: 10.1093/bib/bbl005